Structure of the carboxypeptidase t from Thermoactinomyces vulgaris complex with L - phenyl lactate
- Autores: Akparov V.K.1, Konstantinova G.E.1, Timofeev V.I.1, Shvetsov M.B.2, Kuranova I.P.1,2
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Afiliações:
- Shubnikov Institute of Crystallography of Kurchatov Complex of Crystallography and Photonics of NRC “Kurchatov Institute”
- Moscow Institute of Physics and Technology
- Edição: Volume 69, Nº 3 (2024)
- Páginas: 422-428
- Seção: STRUCTURE OF MACROMOLECULAR COMPOUNDS
- URL: https://ter-arkhiv.ru/0023-4761/article/view/673174
- DOI: https://doi.org/10.31857/S0023476124030067
- EDN: https://elibrary.ru/XOPTJS
- ID: 673174
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Resumo
The crystal structure of the metallocarboxypeptidase T from Thermoactinomyces vulgaris complex with L-phenylactate was obtained with a resolution of 1.73 Å. Unlike pancreatic carboxypeptidase A, which binds one L-phenylactate molecule, in complex with CPT, the ligand occupies both S1 and S1ʹ sites of the active center simultaneously. In this case, conformational changes occur that differ from the changes caused by the alternate occupation of the S1 and S1ʹ sites by BOC-leucine and benzylsuccinic acid. These changes concern the residues E277, E59, L254, G192, S127 and Y218 and reach a span of 0.77 Å. A conclusion is made about the possible role of these residues in the recognition and catalysis of substrates by carboxypeptidase T.
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Sobre autores
V. Akparov
Shubnikov Institute of Crystallography of Kurchatov Complex of Crystallography and Photonics of NRC “Kurchatov Institute”
Autor responsável pela correspondência
Email: valery.akparov@yandex.ru
Rússia, Moscow
G. Konstantinova
Shubnikov Institute of Crystallography of Kurchatov Complex of Crystallography and Photonics of NRC “Kurchatov Institute”
Email: valery.akparov@yandex.ru
Rússia, Moscow
V. Timofeev
Shubnikov Institute of Crystallography of Kurchatov Complex of Crystallography and Photonics of NRC “Kurchatov Institute”
Email: valery.akparov@yandex.ru
Rússia, Moscow
M. Shvetsov
Moscow Institute of Physics and Technology
Email: valery.akparov@yandex.ru
Rússia, Dolgoprudny
I. Kuranova
Shubnikov Institute of Crystallography of Kurchatov Complex of Crystallography and Photonics of NRC “Kurchatov Institute”; Moscow Institute of Physics and Technology
Email: valery.akparov@yandex.ru
Rússia, Moscow; Dolgoprudny
Bibliografia
- Boehr D.D., Nussinov R., Wright P.E. // Nat. Chem. Biol. 2009. V. 5 (11). P. 789. http://doi.org/10.1038/nchembio.232
- Smulevitch S.V., Osterman A.L., Galperina O.V. et al. // FEBS Lett. 1991. V. 291 (1). P. 75. http://doi.org/10.1016/001-5793(91)81107-j
- Grishin A.M., Akparov V.K., Chestukhina G.G. // Biochemistry (Mosc). 2008. V. 73 (10). P. 1140. http://doi.org/10.1134./s0006297908100118
- Schechter I., Berger A. // Biochem. Biophys. Res. Commun. 2012. V. 425 (3). P. 497. http://doi.org/10.1016/s0006-291x(67)80055-x
- Bown D.P., Gatehouse J.A. // Eur. J. Biochem. 2004. V. 271 (10). P. 2000. http://doi.org/10.1111/j.1432-1033.2004.04113.x
- Sukenaga Y., Akanuma H., Suekane C. et al. // J. Biochem. 1980. V. 87 (3). P. 695.
- Akparov V.K., Timofeev V.I., Konstantinova G.E. et al. // PLoS One. 2019. V. 14 (12). P. 1. http://doi.org/10.1371/journal.pone.0226636
- Akparov V.K., Timofeev V.I., Khaliullin I.G. et al. // FEBS J. 2015. V. 282 (7). P. 1214. http://doi.org/10.1111/febs.13210
- Timofeev V.I., Kuznetsov S.A., Akparov V.K. // Biochem. Biokhimiia. 2013. V. 78 (3). P. 252. http://doi.org/10.1134/S0006297913030061
- Novagen pET System Manual TB055 7th Ed. Novagen Madison WI. 1997.
- Battye T., Kontogiannis L., Johnson O. et al. // Acta Cryst. D. 2011. V. 67. P. 271. http://doi.org/10.1107/S0907444910048675
- McCoy A.J., Grosse-Kunstleve R.W., Adams P.D. et al. // J. Appl. Cryst. 2007. V. 40 (4). P. 658. http://doi.org/10.1107/S0021889807021206
- Murshudov G.N., Skubák P., Lebedev A.A. et al. // Acta Cryst. D. 2011. V. 67 (4). P. 355. http://doi.org/10.1107/S90744911001314
- Emsley P., Lohkamp B., Scott W. et al. //Acta Cryst. D. 2010. V. 66. P. 486. http://doi.org/10.1107/S0907444910007493
- Teplyakov A., Polyakov K., Obmolova G. et al. // Eur. J. Biochem. 1992. V. 208 (2). P. 281. http://doi.org/10.1111/j.1432-1033.1992.tb17184.x
- Akparov V.K., Timofeev V.I., Khaliullin I.G. // Biochemistry (Mosc). 2019. V. 83 (12–13). P. 1594. http://doi.org/10.1134/s0006297918120167
- Akparov V.K., Timofeev V.I., Maghsoudi N.N. et al. // Crystallography Reports. 2017. V. 62 (2). P. 249. http://doi.org/10.1134/S106377451702002X
- Teplyakov A., Wilson K.S., Orioli P. et al. // Acta Cryst. D. 1993. V. 49. P. 534. http://doi.org/10.1107/S0907444993007267
- Akparov V., Timofeev V., Khaliullin I. et al. // J. Biomol. Struct. Dyn. 2018. V. 36 (4). P. 956. http://doi.org/10.1080/07391102.2017.1304242
- Akparov V.K., Timofeev V.I., Kuranova I.P. // Crystallography Reports. 2011. V. 56 (4). P. 596. http://doi.org/10.1134/S106377451104002X
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