Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ

Interdisciplinary Biological Journal, covering basic research in cell biology, biochemistry, zoology, botany, physiology and ecology. The journal publishes original experimental data and reviews of general biological problems.

Media registration certificate: ПИ № ФС 77 – 66701 от 28.07.2016

Current Issue

No 6 (2024)

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ТЕОРЕТИЧЕСКАЯ И ЭВОЛЮЦИОННАЯ БИОЛОГИЯ

Uniqueness and phylogenesis of the plague microbe Yersinia pestis
Suntsov V.V.
Abstract

The phylogenies of the plague microbe (Yersinia pestis), reconstructed on the basis of an advanced molecular genetic (MG) approach, are not congruent with the facts accumulated by classical scientific areas: ecology, biogeography, paleontology, epizootiology, and others. The MG approach cannot name the original host of the plague pathogen and reliably characterize the root of the phylogenetic tree. This deficiency is compensated by the ecologic in a broad sense (ECO) approach, which operates with such ecological, phylogeographic and biogeographic categories as geographical population, subspecies, range, ecological niche, direct kinship. Y. pestis, the “blood dweller” of warm-blooded rodent hosts, is transmitted through flea bites and is unique in the family of predominantly intestinal bacteria Yersiniaceae (Enterobacteriaceae). According to the ECO approach, its uniqueness is associated with the origin in the populations of its primary host – Mongolian marmot (Marmota sibirica) in unique circumstances – when the marmot population was infected with pseudotuberculosis not by the traditional alimentary way in grasslands, but in a traumatic way during hibernation. The identification of the original host of the plague pathogen opens up broad prospects for studying its evolutionary history (speciation and intraspecific diversification) and improving the methodology of ecologic, geographic, phylogeographic and phylogenetic studies of this especially dangerous pathogen.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):683-694
pages 683-694 views

BIOCHEMISTRY

Influence of different lighting and feeding regimes on the expression of the fadsd5, fadsd6, elovl2, elovl5a desaturase and elongase genes in the liver of juvenile Atlantic Salmon Salmo salar L. under aquaculture conditions
Khurtina S.N., Murzina S.А., Kuznetsova М.V., Nemova N.N.
Abstract

The relative gene expression of enzymes – desaturases and elongases (fadsd5, fadsd6, elovl2, elovl5a, elovl4), which play a key role in the biosynthesis of long-chain polyunsaturated fatty acids, was studied in the liver of juvenile Atlantic salmon Salmo salar Linnaeus, 1758, reared under different lighting and feeding regimes in aquaculture conditions. The expression level of the fadsd5 desaturase gene was higher in Atlantic salmon smolts (0+), reared under round-the-clock lighting and feeding regime, compared to smolts from experimental group with natural photoperiod and daylight feeding. Changes in the level of gene expression (elovl2, elovl5a, fadsd5) in juvenile Salmo salar reflect adaptive processes at the molecular genetic level during the growth and development of fish and in response to changes in environmental conditions. The obtained results make it possible to assess the ability/requirement to the biosynthesis of PUFAs in juvenile salmon during its growth and development.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):695-704
pages 695-704 views
Activity of energy and carbohydrate metabolism enzymes in Rainbow Trout fingerlings (Oncorhynchus mykiss Walb.) when feeding two types of commercial feed
Rodin М.А., Kuznetsova М.V., Krupnova М.Y., Kuritsyn А.Е., Murzina S.А., Nemova N.N.
Abstract

We studied the activity of energy and carbohydrate metabolism enzymes (cytochrome c oxidase, lactate dehydrogenase, glucose-6-phosphate dehydrogenase, 1-glycerophosphate dehydrogenase, pyruvate kinase, aldolase) in the muscles and liver of rainbow trout of three size groups aged 5, 10 and 12 months under the influence of two types of commercial feeds with different composition. The levels of activity of the enzymes G6PDH, 1-GPDH and aldolase in the liver were significantly higher in fish from the “Feed №2” group. The identified differences in the activity of enzymes in the liver of fish suggest that feed №2 to a greater extent (compared to feed №1) promotes the use of carbohydrates in lipid biosynthesis. Differences in the activity of the enzymes COX, LDH, aldolase, G6PDH and 1-GPDH in the liver and muscles of fish depending on the month of sampling and belonging to the size group are most likely associated with changes in the metabolism of fish as their weight increases towards generative metabolism.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):705-715
pages 705-715 views

ГЕНЕТИКА

Analysis of G:C>T:A, G:C>A:T and G:C>C:G mutations in the TP53 gene in women with and without breast cancer in the long term period after chronic radiation exposure
Nikiforov V.S., Korechenkova А.V., Akleyev А.V.
Abstract

This paper presents the results of the analysis of mutations such as G:C>T:A, G:C>A:T and G:C>C:G in the TP53 gene in peripheral blood cells in women affected by chronic radiation exposure with breast cancer (24 persons) and without breast cancer (17 persons). 17 different variants representing single nucleotide substitutions were registered. The differences in the frequencies of carriers of the detected variants between the comparison and the main group were not statistically significant. All detected variants were present in the IARC TP53 database and had no clinical significance as “pathogenic.” Despite the absence of statistically significant differences, the question of the effect of chronic low dose rate exposure on the frequency of mutations in the TP53 gene remains open and requires further research involving a greater amount of data.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):716-725
pages 716-725 views

BOTANY

Distribution of Lemna at the Range Boundary in the North-West of the Murmansk Region as a result of anthropogenic changes in water bodies
Zueva N.V., Grishutkin О.G., Efimov D.Y., Bobrov А.А.
Abstract

Data on the new localities of Lemna minor, L. trisulca, and hybrid between L. minor and L. turionifera (L. × japonica) (Lemnaceae) in the north-west of the Murmansk Region (north of 68.5° N), i.e., in the Pasvik State Nature Reserve and neighboring territories in the drainage basin of the Paz River, are presented. Lemna minor and L. trisulca were previously known for the region by several reports. In the north-west of the Murmansk Region, 2 new localities of Lemna minor, 1 locality of L. × japonica, and 10 localities of L. trisulca were found. In total, representatives of Lemna occurred in 18 studied sites: L. minor in 2, L. × japonica in 2, and L. trisulca in 16 (L. minor and L. trisulca grew together in 2 sites). In the studied rivers and lakes, the pH range of water varied from 6.0 to 7.6, i.e., was mainly neutral (the average value was 6.9). TDS varied in the range from 17 to 251 ppm (on average, 53 ppm). The localities of L. minor in the unnamed lake near Zapolyarnyi town and in Kuetsjarvi Lake are probably the northernmost in the world, while locality of L. trisulca in the Paz River in Klistervatn Lake is the northernmost in European Russia. In the north of the Murmansk Region, L. minor and L. × japonica were associated only with anthropogenic eutrophicated water bodies with increased TDS in comparison to the background value. These taxa can be considered an indicator of high trophicity in this region. The localities of L. trisulca are mainly anthropogenic transformed water bodies. The maximum abundance of this species is also recorded in the areas of increased trophic level.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):726-734
pages 726-734 views
Aristolochia of Siphisia section in vitro
Nakonechnaya О.V., Gafitskaya I.V., Yusupova Е.P.
Abstract

The results of the study represent an optimization protocol for clonal micropropagation of 4 species of the genus Aristolochia, Siphisia section. Plants of these species are rare, endemic and medicinal plants. 6-Benzylaminopurine (BAP) (0.5, 1.0, 1.2 and 1.4 mg/L) and indolylbutyric acid (IBA) (0.5 and 1.0 mg/L) were used in this work. The use of subcultivation with different nutrient media (MS supplemented with 0.5 mg/l BAP at the propagation stage and ½ WPM with the addition of 0.5 mg/l IBA at the rooting stage) contributes to the mass production of microplants. The maximum values of the microshoot height for each species were detected on the medium with 0.5 mg/l BAP. Explants of A. macrophylla and A. manshuriensis were characterized with the greatest reproduction coefficient (34 pcs.); while A. californica explants displayed the least coefficient (18.6 pcs.). The difference is associated with the activation of a different number of buds in each species.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):735-742
pages 735-742 views

PLANT PHYSIOLOGY

Activity of antioxidant enzymes and expression of the genes encoding them in leaves of wheat plants with different allelic status of the GPC-B1 gene with optimal zinc content in the environment and its deficiency
Batova Y.V., Repkina N.S., Ignatenko А.А., Kaznina N.М.
Abstract

It has been shown that the studied variants of bread wheat plants are resistant to zinc deficiency in substrate. Various ways of adaptation to these conditions by the antioxidant system have been discovered in plants that have a functional allele of the GPC-B1 gene. Thus, in plants of line 15-7-1, the maintain of the redox balance of cells is associated with an increase in the expression of the Cu/ZnSOD gene and a decrease in the expression of the FeSOD and CAT1 genes, whereas in plants of line 13-3, in addition to an increase in the transcripts content of the Cu/ZnSOD gene, with a high constitutive activity of superoxide dismutase (SOD) and catalase (CAT). The data obtained can be used to create wheat varieties (lines) capable of producing seeds with a relatively high content of zinc under zinc deficiency in the soil.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):743-753
pages 743-753 views

ZOOLOGY

Effect of water temperature on the size-age structure of the population of Hydrobia acuta Black Sea molluscs and on invasion with Gynaecotyla adunca parthenitae
Belousova Y.V., Makarov M.V., Lyakh A.M.
Abstract

In the present work, the influence of water temperature on the size-age structure and size of the population of Hydrobia acuta molluscs and their invasion with parthenites of the microphallid trematode Gynaecotyla adunca in Kazachya Bay (Black Sea) was studied. A positive correlation between the indicators of invasion extensity and the size, abundance of molluscs and water temperature was revealed. It was found that the seasonal dynamics of G. adunca parthenites abundance clearly distinguishes the periods of mass infesction of molluscs, which are graphically displayed by two peaks – in July and November. It was confirmed that the life cycle of the Black Sea molluscs Hydrobia acuta proceeds similarly to that of Mediterranean individuals

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):754-760
pages 754-760 views
Development and validation of a method for assessing individual behavioral characteristics of a domestic dog (Canis lupus familiaris) by online survey of owners
Ganitskaya Y.V., Ever A.A., Gritsenko V.V., Feoktistova N.Y., Surov A.V.
Abstract

Assessment of individual behavioral characteristics (IBC) of domestic dogs is of both fundamental and practical interest to researchers. The paper presents the results of developing and assessing the reliability of a methodology for assessing IPC based on an online survey of owners who do not have special training. 4530 respondents took part in the survey. The questionnaire included 20 questions, which were rated on a Likert scale. Using the factor analysis method, 6 factors were identified, by which the IPC of different breed groups was compared according to the FCI classification, and the prognostic role of breed in determining differences in the IPC of dogs was assessed. A comparison of the data from our questionnaire with similar ones obtained in the USA and Japan (Q-BARK) showed that the identified factors generally coincided (Cronbach’s Alpha was 0.73, which indicates sufficient reliability of the methodology), although the questions for the Russian audience were formulated differently. Thus, this questionnaire can be used to assess the IPC, the formation of a modern behavioral portrait of a particular breed, its compliance with existing standards, as well as changes that occur as a result of the lack of selection, for example, for working qualities.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):761–772
pages 761–772 views

ECOLOGY

Primary production in the littoral zone of Lake Onego and its contribution to the productivity of the reservoir
Tekanova E.V.
Abstract

For the first time, two-year seasonal studies of phytoplankton production were carried out in the rocky-sandy littoral zone of the northern deep and cold-water Lake Onego. The research results showed that photosynthesis is characterized by two or three seasonal maxima, the values of which are within the limits of oligotrophic ecosystems. The main primary producers, the concentration of phosphorus in water, and water temperature during the growing season are considered. Differences in the seasonal dynamics of photosynthesis and a similar level of seasonal average and maximum values were revealed in comparison with the deep-water region of the lake. The small contribution of littoral phytoplankton production to the primary productivity of the ecosystem is shown.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):786–795
pages 786–795 views
Habitat suitability and areal dynamics of rare desert species of myxomycetes of the genus Didymium under global climate change in Asia
Vlasenko A.V., Vlasenko V.A.
Abstract

The ability to determine the spatial distribution of rare species is critical to understanding the environmental factors that influence them. Maximum entropy (MaxEnt) modeling of spatial distributions addresses this problem by allowing inferences about species distributions under environmental change from occurrence data. Using this method, we mapped the current and potential geographic distribution of two rare species of desert myxomycetes, Didymium mexicanum and Didymium nullifilum. Models of potential global species distributions were created using bioclimatic data and MaxEnt software to model species habitat suitability under current conditions (~1950–2000) and under projected changes in future climate (2100 AD) based on 18 spatial distribution points for D. mexicanum and 4 points for D. nullifilum. A detailed morphological description is given for the species. We identified the species D. mexicanum for the first time in Asia.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):796–808
pages 796–808 views
Metabolic characteristics of the amphipod Gammarus oceanicus (Crustacea: Amphipoda) exposed to octylphenol (4-T-OP)
Berezina N.A., Gubelit Y.I., Bakina L.G., Egorova A.V., Kholodkevich S.V.
Abstract

The growing impact of human activities on the biosphere requires research into the effects of exposure to hazardous toxic substances on aquatic ecosystems. Ecophysiological parameters of the amphipod Gammarus oceanicus Segerstråle, 1947, such as rates of food consumption, oxygen consumption and phosphate excretion (excreted in the body’s urine), were studied in order to determine the responses of these crustaceans to the influence of a little-studied micropollutant of anthropogenic origin, xenoextrogen, 4-tert-octylphenol (4t-OP). After 28 days of exposure to the lowest concentrations of 4t-OP (0.25 μg/l), a decrease in the feeding and excretory activity of crustaceans was detected, and the level of oxygen consumption was similar to the values in control individuals. All studied parameters of the tested animals changed significantly after the same time of exposure to 2.5 μg/l 4t-OP, showing an adverse effect on the functioning of the crustacean organism. The data obtained can be used to develop criteria for the quality control of the aquatic environment.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):809–816
pages 809–816 views
Long-term dynamics in different avian influenza viruses in mallard (Anas platyrhynchos) population in Moscow City and region: dependence on the migration activity
Treshchalina A.A., Rodina E.F., Gambaryan A.S., Boravleva E.Y., Avilova K.V., Kharitonov S.P., Litvin K.E.
Abstract

The purpose of this study is revealing of the avian influenza virus diversity at the Moscow waterbodies and comparison of the virology changing pattern to the Mallard’s migratory features and wintering capacities at the Moscow waterbodies, as well as an attempt to explain shifting in the virus strain contents and diversity. Mallard droppings were collected in the autumn of 2008–2023 from shores of Moscow and Moscow Region waterbodies. Avian influenza viruses from the feaces were extracted. The extraction process was the standard one with the virus breeding on the chicken embryos. After breeding the extracted viruses were treated by PCR together with specific primaries and then sequences of the type A viruses were obtained. In 2008–2013 European virus strains were prevalent in the Mallard samples, whereas in 2014–2019 the prevalence shifted to the Asian strains. Comparison of these results to the changing of Mallard migration features allow suggesting that European strains were entered into the Moscow Region mainly from the southern Europe. The Asian strains were entered from the Western Europe, since 2014 this part of Europe really became a focus of the Asian strains. For the study period of 2008–2019 in the Mallard feaces extractions from the Moscow waterbodies we observed decreasing of the virus strain numbers. The frequency and the diversity of extracted viruses decreased sharply after 2014. There could be several causes for the decreasing of the strain diversity, in particular this is changing in proportions of hunted ducks during spring and autumn hunting, increasing Mallard numbers on winter grounds within the breeding range, as well as, declining numbers in Black-headed Gulls that are a frequent carrier of the avian influenza.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):817–830
pages 817–830 views

ФИЗИОЛОГИЯ ЖИВОТНЫХ И ЧЕЛОВЕКА

The relationship of quantitative indicators sCD56 and sCD16 with the level of immunocompetent cells, cytokines, circulating immune complexes and cyclic nucleotides in practically healthy people living in the Arctic territory
Samodova A.V., Dobrodeeva L.K., Patrakeeva V.P.
Abstract

We studied the content of immunocompetent blood cells, phagocytic activity of neutrophils, concentrations of cytokines, circulating immune complexes and levels of cyclic nucleotides (cAMP and cGMP) of serum with different levels of soluble adhesion molecules NCAM (CD56) and immunoglobulin Fc-receptor III (CD16) in practically healthy people living in the Arctic territory. It was found that the increase in serum concentration of sCD56 and sCD16 in practically healthy adults of working age is associated with an increase in the content of cells with the corresponding membrane receptors. The increase in sCD56 concentration occurs with an increase in the content of NK cells (CD3-CD16+CD56+) and T-NK cells (CD3+CD16+CD56+). The increase in sCD16 level is accompanied by a decrease in the content of circulating in the blood lymphocytes predominantly T-helper cells (CD3+CD4+), cytotoxic T-lymphocytes (CD3+CD8+) and activated T-lymphocytes (CD3+HLADR+). Increased sCD56 concentrations were associated with increases in pro-inflammatory IL-1β, IL-6, TNF-α and anti-inflammatory IL-10. Concentrations of circulating immune complexes increased with increasing sCD16 and sCD56 content. The signal conduction activity increases with increasing content of CD16+ and CD56+ leukocytes of peripheral blood and sCD56+ leukocytes and shedding of these molecules occurs against the background of decreasing concentrations of cAMP and cGMP.

Izvestiâ Akademii nauk. Rossijskaâ akademiâ nauk. Seriâ biologičeskaâ. 2024;(6):773–785
pages 773–785 views